| MirGeneDB ID | Ovu-Novel-27 |
|---|
| Family name |
COL-NOVEL-27 (all species) |
|---|
| Seed |
CAUCCAC |
|---|
| Species |
Common octopus (Octopus vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Novel-27
Obi-Novel-27
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01077135.1: 1016954-1017022 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAUACUUUGAAGUUUUUGUGUGUGGUGCACACAUCCACAUGUUGUUGACUUGCCAAAUUCCCCUUCUCACAGUACCGAGUCAACAACUUGUGGAUGUGUACAAAACAGACUCAUUGCAACAUAUCAAGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAUACUUUGAAGUUUUU--| G GG C U CCAAAUUCCCC
GU UGU UG ACACAUCCACA GUUGUUGACUUG \
CA ACA AC UGUGUAGGUGU CAACAACUGAGC U
UGAACUAUACAACGUUACU^ G AA A U CAUGACACUCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Ovu-Novel-27_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACAUCCACAUGUUGUUGACUUG -22
Get sequence
|
|---|
| Star sequence |
Ovu-Novel-27_3p* |
| mirBase accession | None |
|---|
| Sequence |
47- AGUCAACAACUUGUGGAUGUGU -69
Get sequence
|
|---|
