| MirGeneDB ID | Esc-Novel-27 |
|---|
| Family name |
COL-NOVEL-27 (all species) |
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| Seed |
CAUCCAC |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Obi-Novel-27
Ovu-Novel-27
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-27_pre_SRIE01059042.1:7301571-7301837: 101-167 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGCAUCGUGUGUAUCUGUGUGCGAUGUUCACAUCCACAUGUUGUUGACUUGCUAUAGCCCCCCUCUCGACGCCGAGUCAACAACAUGUGGAUGUGUGCACAGCAUAUUCAAAUCUACACUCUUCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGCAUCGUGUGUAUCU--| GA U CUAUAGCCCC
GUGUGC UGU CACAUCCACAUGUUGUUGACUUG \
UAUACG ACG GUGUAGGUGUACAACAACUGAGC C
UACUUCUCACAUCUAAACU^ AC U CGCAGCUCUC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Esc-Novel-27_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACAUCCACAUGUUGUUGACUUG -22
Get sequence
|
|---|
| Co-mature sequence |
Esc-Novel-27_3p |
| mirBase accession | None |
|---|
| Sequence |
45- AGUCAACAACAUGUGGAUGUGU -67
Get sequence
|
|---|
