| MirGeneDB ID | Ovu-Novel-17 |
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| Family name |
COL-NOVEL-17 (all species) |
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| Seed |
GCAAGAC |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Novel-17-v1
Esc-Novel-17-v2
Obi-Novel-17
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01019200.1: 72952-73009 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGAAUCUGGCAUCUUGUUGAGAGUCACUGAGCAAGACAGACUUACUUUUGUGACUUUUAUCACCAAAGGGUUUCUGUGUUGUCCUCAGUUACCUCUCUCCUCCCAUCAUAUGUCUAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAGAAUCUGGCAUCUUGUU- UC- --| G CUUA UGACUU
GAGAG ACUGAG CAA ACAGA CUUUUG \
CUCUC UGACUC GUU UGUCU GGAAAC U
UAUCUGUAUACUACCCUCCU CAU CU^ G UUG- CACUAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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| Mature sequence |
Ovu-Novel-17_5p |
| mirBase accession | None |
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| Sequence |
0- AGCAAGACAGACUUACUUUUGU -22
Get sequence
|
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| Star sequence |
Ovu-Novel-17_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- CAAAGGGUUUCUGUGUUGUCCUCA -58
Get sequence
|
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