| MirGeneDB ID | Esc-Novel-17-v1 |
|---|
| Family name |
COL-NOVEL-17 (all species) |
|---|
| Seed |
AAAGGGU |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Esc-Novel-17-v2
|
|---|
| Orthologues |
Obi-Novel-17
Ovu-Novel-17
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-17-v1_pre_SRIE01005051.1:1594940-1595083: 44-101 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGACGUCAUCACUUGAGGGUUUUGUUACUGAGCAAGACAGACUUACUUUUGUGACUUUUAGCACCAAAGGGUUUCUGUGUUGUUCUCAGUUGCGGCUCUCUUCUCAUCUCAACAAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGACGUCAUCACUUGAG-- UU U --| G CUUA UGACUU
GG UUGU ACUGAG CAA ACAGA CUUUUG \
UC GGCG UGACUC GUU UGUCU GGAAAC U
AAAAACAACUCUACUCUUC UC U UU^ G UUG- CACGAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Novel-17-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCAAGACAGACUUACUUUUGU -22
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-17-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
34- CAAAGGGUUUCUGUGUUGUUCUCA -58
Get sequence
|
|---|
