| MirGeneDB ID | Ocu-Mir-590 |
|---|
| Family name |
MIR-590 (all species) |
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| Seed |
CGUUUUA |
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| Species |
Rabbit (Oryctolagus cuniculus) |
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| MiRBase ID |
ocu-mir-590
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-590
Cfa-Mir-590
Dno-Mir-590
Hsa-Mir-590
Mml-Mir-590
Oan-Mir-590
|
|---|
| Node of Origin (locus) |
Mammalia
|
|---|
| Node of Origin (family) |
Mammalia
|
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Genome context
(oryCun2_add) |
chrUn0067: 577872-577932 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGUGUAGCAGUCCUAAGCCAGUCGGAAAUGAGCUUAUUCAUAAAAGUGCAGUACGAGCCGGUGAGCCUGUCGUUUUAUGUAUAAGCUCGUCUCUGAUGGAAACCUGCCGCGACGUCUCCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGUGUAGCAGUCCUAAG---| G A U GU UACGAGC
CCA UCGGA AUGAGCUUAU CAUAAAA GCAG \
GGU AGUCU UGCUCGAAUA GUAUUUU UGUC C
GCCUCUGCAGCGCCGUCCAAA^ - C U GC CGAGUGG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ocu-Mir-590_5p* (predicted) |
| mirBase accession | MIMAT0048535 |
|---|
| Sequence |
0- GAGCUUAUUCAUAAAAGUGCAG -22
Get sequence
|
|---|
| Mature sequence |
Ocu-Mir-590_3p |
| mirBase accession | MIMAT0048536 |
|---|
| Sequence |
40- UCGUUUUAUGUAUAAGCUCGU -61
Get sequence
|
|---|
