| MirGeneDB ID | Obi-Novel-69-P1 |
|---|
| Family name |
OCT-NOVEL-69 (all species) |
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| Seed |
UAAAUGC |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
Obi-Novel-69-P2
Obi-Novel-69-P3
|
|---|
| Orthologues |
Ovu-Novel-69-P1
|
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| Node of Origin (locus) |
Octopus
|
|---|
| Node of Origin (family) |
Octopus
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ417213: 413353-413412 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UACUGGUUCAACAUUAUGAGUAAGAAGGCUUGUGUUUCUUGAUGCAUUCCACAGUUUAUUAUAUACUUUAAAUGCACCAAGAAUCACGAUUCUUCUGGCUCCCUUCAUCACUGAACAUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UACUGGUUCAACAUUAU--| A GC U A CCAC UUUAU
GAGU AGAAG UUGUG UUCUUG UGCAUU AG \
CUCG UCUUC AGCAC AAGAAC ACGUAA UC U
AAUACAAGUCACUACUUCC^ G UU U C AUU- AUAUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Obi-Novel-69-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGUGUUUCUUGAUGCAUUCCACAG -24
Get sequence
|
|---|
| Mature sequence |
Obi-Novel-69-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UUAAAUGCACCAAGAAUCACGAU -60
Get sequence
|
|---|
