| MirGeneDB ID | Obi-Novel-24-v1 |
|---|
| Family name |
COL-NOVEL-24 (all species) |
|---|
| Seed |
UUAGUGC |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Obi-Novel-24-v2
Obi-Novel-24-v3
|
|---|
| Orthologues |
Esc-Novel-24-v1
Ovu-Novel-24-v1
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ432289: 1359-1420 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAAGAAGAUUAGAGUACAAUUCCGAUCGUUAGCUGGUUAUGUGAACUAAGAUUCAUUUCCUUAUCAAAUAUUUAGUGCACAUAACUGGCUGAUGAAUAGAAUUUGUUAUCGUCUCGGAAAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAAGAAGAUUAGAGUAC--| CGA UG A AUUCAUUUC
AAUUC UCGUUAGC GUUAUGUG ACUAAG C
UUAAG AGUAGUCG CAAUACAC UGAUUU U
CUAAAGGCUCUGCUAUUGU^ AUA GU G AUAAACUAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Obi-Novel-24-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCUGGUUAUGUGAACUAAGAU -22
Get sequence
|
|---|
| Mature sequence |
Obi-Novel-24-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UUUAGUGCACAUAACUGGCUGA -62
Get sequence
|
|---|
