MirGeneDB 2.1
MirGeneDB ID

Mmu-Mir-330-v1

Family name MIR-330 (all species)
Seed AAAGCAC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-330
Paralogues Mmu-Mir-330-v2 
Orthologues Bta-Mir-330-v1  Cfa-Mir-330-v1  Cpo-Mir-330-v1  Dno-Mir-330-v1  Ete-Mir-330-v1  Hsa-Mir-330-v1  Mml-Mir-330-v1  Ocu-Mir-330-v1  Rno-Mir-330-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)		 chr7: 19181486-19181549 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-330-v1)		 Mir-330-v1 chr7: 19181486-19181549 [+] UCSC Ensembl
Mir-330-v2 chr7: 19181486-19181549 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCUGUGUGACCCUUUGGCGAUCUCUGCCUCUCUGGGCCUGUGUCUUAGGCUCUUCAAGAUCCAACGAGCAAAGCACAGGGCCUGCAGAGAGGUAGCGCUCUGCUCCUUACUCGCCUGAUUAU
Get precursor sequence
Structure
        10              20        30          40         50        60 
GUGCUGUGUGACCCUUU------|   AUCU           --    -    U   AG   CUUCAAG 
                       GGCG    CUGCCUCUCUG  GGCC UGUG CUU  GCU       \
                       UCGC    GAUGGAGAGAC  CCGG ACAC GAA  CGA       A
UAUUAGUCCGCUCAUUCCUCGUC^   ----           GU    G    -   A-   GCAACCU 
  120       110       100            90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-330-v1_5p*
mirBase accessionMIMAT0004642
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCU -23
Get sequence
Proposed targets microrna.org: MIMAT0004642
TargetScanVert: mmu-miR-330-5p
miRDB: MIMAT0004642
Mature sequence

Mmu-Mir-330-v1_3p
mirBase accessionMIMAT0000569
Sequence 
40- CAAAGCACAGGGCCUGCAGAGAGG -64
Get sequence
Proposed targets microrna.org: MIMAT0000569
miRDB: MIMAT0000569