MirGeneDB 2.1
MirGeneDB ID

Mml-Mir-542-v1

Family name MIR-542 (all species)
Seed GUGACAG
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-542
Paralogues Mml-Mir-542-v2 
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cpo-Mir-542  Dno-Mir-542-v1  Ete-Mir-542  Hsa-Mir-542-v1  Mmu-Mir-542  Ocu-Mir-542-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rheMac8_trace)		 chrX: 128513154-128513212 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542-v1)		 Mir-450-P3 chrX: 128511991-128512048 [-] UCSC Ensembl
Mir-450-P2 chrX: 128512154-128512210 [-] UCSC Ensembl
Mir-450-P1 chrX: 128512325-128512381 [-] UCSC Ensembl
Mir-542-v1 chrX: 128513154-128513212 [-] UCSC Ensembl
Mir-542-v2 chrX: 128513155-128513211 [-] UCSC Ensembl
Mir-15-P2c chrX: 128518112-128518174 [-] UCSC Ensembl
Mir-15-P1c chrX: 128518445-128518503 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGUCAAGGAUGCACAGACCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCAUUCAUCUUCAUAGCAAA
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Structure
        10        20          30        40        50         
UCAGUCAAGGAUGCACAGAC--|      AUC    GG    UCA         AUACCA 
                      CUCAGAC   UCGG  AUCA   UGUCACGAG      \
                      GGGUCUG   AGUC  UAGU   ACAGUGUUC      C
AAACGAUACUUCUACUUACCGA^      GAA    AA    UAG         ACGUGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Star sequence

Mml-Mir-542-v1_5p*
mirBase accessionMIMAT0006406
Sequence 
0- UCGGGGAUCAUCAUGUCACGAG -22
Get sequence
Proposed targets TargetScanVert: mml-miR-542-5p
Mature sequence

Mml-Mir-542-v1_3p
mirBase accessionMIMAT0006407
Sequence 
37- UGUGACAGAUUGAUAACUGAAA -59
Get sequence
Proposed targets TargetScanVert: mml-miR-542-3p