MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-489-v2

Family name MIR-489 (all species)
Seed GACAUCA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-489-v1 
Orthologues Aca-Mir-489-v2  Ami-Mir-489-v2  Bta-Mir-489-v2  Cfa-Mir-489  Cli-Mir-489-v2  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v2  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v2  Hsa-Mir-489-v2  Lch-Mir-489  Mal-Mir-489-v2  Mml-Mir-489-v2  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v2  Tni-Mir-489-v2  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(LepOcu1)		 LG11: 37047669-37047729 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACGUGUAGGCUGAUAUGCGUGGUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUCAAUGUUUGGAGUGACAUCAUAUGUACGGCUGCUAAACUUCUACAUGGGACAACAGUACUCUUU
Get precursor sequence
Structure
        10          20        30        40        50          
ACGUGUAGGCUGAUAUGC--|   U  C    UG             C      UACUUCA 
                    GUGG GG UUGG  GUCGUAUGUAUGA GUCAUU       \
                    CAUC UC AAUC  CGGCAUGUAUACU CAGUGA       A
UUUCUCAUGACAACAGGGUA^   U  A    GU             A      GGUUUGU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-489-v2_5p*
mirBase accessionNone
Sequence 
0- UGGUCGUAUGUAUGACGUCAUU -22
Get sequence
Mature sequence

Loc-Mir-489-v2_3p
mirBase accessionNone
Sequence 
39- UGACAUCAUAUGUACGGCUGCU -61
Get sequence