Mir-2-o16

MirGeneDB ID

Lgi-Mir-2-o16

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Owl limpet (Lottia gigantea)

MiRBase ID

Paralogues

Lgi-Mir-2-o14 Lgi-Mir-2-o15 Lgi-Mir-2-o17 Lgi-Mir-2-o18 Lgi-Mir-2-o19

Orthologues

Node of Origin (locus)

L. gigantea

Node of Origin (family)

Protostomia

Genome context
(Lotgi1)

LOTGIsca_2: 4515158-4515216 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-o16)

Mir-71 LOTGIsca_2: 4515804-4515862 [-] Ensembl
Mir-2-o14 LOTGIsca_2: 4520084-4520140 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AAUCAUAUGCCUGGAUUCAGGAAGCUGUGCUGACCAAGUGGCUGUGAACGGGUUUAUGAUUAUUCCUAUCACAGCCUGCUUGGAUCAGCAUAGACCACUGCUUUUAUCAUCUUCCCUUC

Get precursor sequence

Structure

        10          20        30          40        50        
AAUCAUAUGCCUGGAUU--   GAAG         -      -|       AC  GUUUAU 
                   CAG    CUGUGCUGA CCAAGU GGCUGUGA  GG      \
                   GUC    GAUACGACU GGUUCG CCGACACU  CC      G
CUUCCCUUCUACUAUUUUC   ACCA         A      U^       AU  UUAUUA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis.

3' NTU

Motifs

Tissue expression

To

Star sequence

Lgi-Mir-2-o16_5p* (predicted)

mirBase accession

None

Sequence

0- UGACCAAGUGGCUGUGAACGG -21

Get sequence

Mature sequence

Lgi-Mir-2-o16_3p

mirBase accession

None

Sequence

36- UAUCACAGCCUGCUUGGAUCAGC -59

Get sequence