| MirGeneDB ID | Lgi-Mir-1992-P1 |
|---|
| Family name |
MIR-1992 (all species) |
|---|
| Seed |
CAGCAGU |
|---|
| Species |
Owl limpet (Lottia gigantea) |
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| MiRBase ID |
|
|---|
| Paralogues |
Lgi-Mir-1992-P2
|
|---|
| Orthologues |
Cgi-Mir-1992
Cte-Mir-1992
Esc-Mir-1992
Lan-Mir-1992
Npo-Mir-1992
Obi-Mir-1992
Ovu-Mir-1992
|
|---|
| Node of Origin (locus) |
L. gigantea
|
|---|
| Node of Origin (family) |
Platytrochozoa
|
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Genome context
(Lotgi1) |
LOTGIsca_253: 36542-36604 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUGCACCACUGCAAUUGACGGUGAUGGGACCAGUCAGUGGAUGAUUGUUAUGAUGGCGAUGUUAUUUUAUCAGCAGUUGUACCACUGAUUGGGCUCCAUUUCUUAAAACUUCAAUCUGAUAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUGCACCACUGCAAUUGAC- U A- -|UG UA GCGAU
GG GAUGGG CCAGUCAGUGG A AUUGU UGAUG G
UC UUACCU GGUUAGUCACC U UGACG ACUAU U
AUAUAGUCUAACUUCAAAAU U CG A^GU -- UUUAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Lgi-Mir-1992-P1_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUCAGUGGAUGAUUGUUAUGAUG -25
Get sequence
|
|---|
| Mature sequence |
Lgi-Mir-1992-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UCAGCAGUUGUACCACUGAUUGGG -63
Get sequence
|
|---|
