Mir-2-P3

MirGeneDB ID

Isc-Mir-2-P3

Family name

MIR-2 (all species)

Seed

CAUCAAA

Species

Deer tick (Ixodes scapularis)

MiRBase ID

Paralogues

Isc-Mir-2-P1 Isc-Mir-2-P4

Orthologues

Aae-Mir-2-P3 Bge-Mir-2-P3 Cbr-Mir-2-o3 Cel-Mir-2-o3 Csc-Mir-2-P3n Csc-Mir-2-P3o Dan-Mir-2-P3a-v1 Dan-Mir-2-P3a-v2 Dan-Mir-2-P3b Dma-Mir-2-P3 Dme-Mir-2-P3a Dme-Mir-2-P3b Dmo-Mir-2-P3b Dpu-Mir-2-P3 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dya-Mir-2-P3a Dya-Mir-2-P3b Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(IscaWI)

DS799611: 45337-45397 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P3)

Mir-2-P4 DS799611: 45175-45234 [-] Ensembl
Mir-2-P1 DS799611: 45564-45628 [-] Ensembl
Mir-71 DS799611: 45706-45768 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CCUCCCUCGUUCGAGAUUGCUCUCACCCGGGCAUCAAACUGGUUGUGGUUUGUCACGUCAGAUAUCAUAUCACAGCCAUCUUUGAUGACCCUGGCCCGGCAAAUUGGCAUCGUGGUUGUGG

Get precursor sequence

Structure

        10           20        30          40        50         
CCUCCCUCGUUCGAGAU---    CUCA  C   -       C-|         U  UCACGU 
                    UGCU    CC GGG CAUCAAA  UGGUUGUGGU UG      \
                    ACGG    GG CCC GUAGUUU  ACCGACACUA AC      C
GGUGUUGGUGCUACGGUUAA    CCC-  U   A       CU^         U  UAUAGA 
 .       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Al	Mi	Mi	Mi	Sa	Sa	Sa	Sa	To

Mature sequence

Isc-Mir-2-P3_5p

mirBase accession

None

Sequence

0- GCAUCAAACUGGUUGUGGUUUG -22

Get sequence

Star sequence

Isc-Mir-2-P3_3p*

mirBase accession

None

Sequence

37- UAUCACAGCCAUCUUUGAUGACCC -61

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