Mir-216-P2a

MirGeneDB ID

Hsa-Mir-216-P2a

Family name

MIR-216 (all species)

Seed

AAUCUCU

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-216b

Paralogues

Hsa-Mir-216-P2b

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Ami-Mir-216-P2a Asu-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2a Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cgi-Mir-216-P2 Cli-Mir-216-P2a Cmi-Mir-216-P2a Cpi-Mir-216-P2a Cpo-Mir-216-P2a Dan-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dpu-Mir-216-P2 Dre-Mir-216-P2a Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2a2 Efe-Mir-216-P2 Ete-Mir-216-P2a Gga-Mir-216-P2a Gja-Mir-216-P2a Gmo-Mir-216-P2a Hme-Mir-216-P2 Isc-Mir-216-P2 Lch-Mir-216-P2a Lgi-Mir-216-P2 Loc-Mir-216-P2a Mal-Mir-216-P2a Mdo-Mir-216-P2a Mml-Mir-216-P2a Mmu-Mir-216-P2a Oan-Mir-216-P2a Ocu-Mir-216-P2a Pbv-Mir-216-P2a Pma-Mir-216-P2a1 Pma-Mir-216-P2a2 Rno-Mir-216-P2a Sha-Mir-216-P2a Spt-Mir-216-P2a Sto-Mir-216-P2a Tca-Mir-216-P2 Tgu-Mir-216-P2a Tni-Mir-216-P2a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr2: 56000724-56000785 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2a)

Mir-217-v2 chr2: 55982983-55983043 [-] UCSC Ensembl
Mir-217-v1 chr2: 55982984-55983042 [-] UCSC Ensembl
Mir-216-P2b chr2: 55988980-55989041 [-] UCSC Ensembl
Mir-216-P2a chr2: 56000724-56000785 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUAAGUACAACUUCAAAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAGGAAAUCACACACUUACCCGUAGAGAUUCUACAGUCUGACAUCUUCAAGCAUCGAACCAUU

Get precursor sequence

Structure

        10          20        30        40        50        60
UUAAGUACAACUUCAAA--|  G       GAA         A  C  A    AUGUCACU 
                   GUG CAGACUG   AAUCUCUGC GG AA UGUG        G
                   UAC GUCUGAC   UUAGAGAUG CC UU ACAC        A
UUACCAAGCUACGAACUUC^  A       AUC         C  A  C    ACUAAAGG 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-216-P2a_5p

mirBase accession

MIMAT0004959

Sequence

0- AAAUCUCUGCAGGCAAAUGUGA -22

Get sequence

Proposed targets

microrna.org: MIMAT0004959
TargetScanVert: hsa-miR-216b-5p
miRDB: MIMAT0004959

Star sequence

Hsa-Mir-216-P2a_3p*

mirBase accession

MIMAT0026721

Sequence

40- ACACUUACCCGUAGAGAUUCUA -62

Get sequence

Proposed targets

TargetScanVert: hsa-miR-216b-3p
miRDB: MIMAT0026721