| MirGeneDB ID | Hme-Mir-279-o34 |
|---|
| Family name |
MIR-279 (all species) |
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| Seed |
GACUAGA |
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| Species |
Longwing butterfly (Heliconius melpomene) |
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| MiRBase ID |
hme-mir-279c
|
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| Paralogues |
Hme-Mir-279-o31
Hme-Mir-279-o32
Hme-Mir-279-o33
|
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| Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
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| Node of Origin (locus) |
H. melpomene
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Hmel_1) |
HE671887: 111974-112030 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UCUGCAUGAGUGUGAGUGACAGCUUCGGAAGAUGGGUGAAUUUCUAGUGUCAAGUUACGGAACCUUGACUAGAUUUUCACUUAUCCUUUGCGGCUGUCUUUACCUGCUUUUUUGUUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCUGCAUGAGUGUGAGU--| U A UU GU UUAC
GACAGCU CGGA GAUGGGUGAA UCUA GUCAAG \
CUGUCGG GUUU CUAUUCACUU AGAU CAGUUC G
GUUGUUUUUUCGUCCAUUU^ C C UU -- CAAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Hme-Mir-279-o34_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAUGGGUGAAUUUCUAGUGUCAAG -24
Get sequence
|
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| Mature sequence |
Hme-Mir-279-o34_3p |
| mirBase accession | MIMAT0024966 |
|---|
| Sequence |
35- UGACUAGAUUUUCACUUAUCCU -57
Get sequence
|
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