Mir-724-P1-v1

MirGeneDB ID

Gmo-Mir-724-P1-v1

Family name

MIR-724 (all species)

Seed

UAAAGGG

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-724-2

Paralogues

Gmo-Mir-724-P1-v2 Gmo-Mir-724-P2-v1 Gmo-Mir-724-P2-v2

Orthologues

Dre-Mir-724-P1-v1 Dre-Mir-724-P1-v2 Mal-Mir-724-P1-v1 Mal-Mir-724-P1-v2 Tni-Mir-724-P1-v1 Tni-Mir-724-P1-v2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Neopterygii

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_2603: 29782-29842 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-724-P1-v1)

Mir-724-P1-v1 GeneScaffold_2603: 29782-29842 [-] UCSC Ensembl
Mir-724-P1-v2 GeneScaffold_2603: 29783-29841 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGACCCCCCCCCCCACCCAGCAGACUGGGUUUAAAGGGAAUUUGCGACUGUUAGUCAAAUCAUUAGAACAGCCACACCUUCCUUUUAAGAUCUUGUCUGCUGCUGUAAGCUGCCCCACCCC

Get precursor sequence

Structure

        10          20        30         40        50         
GGACCCCCCCCCCCACC--        U     -|        UU  CGA     AGUCAA 
                   CAGCAGAC GGGUU UAAAGGGAA  UG   CUGUU      A
                   GUCGUCUG UCUAG AUUUUCCUU  AC   GACAA      U
CCCCACCCCGUCGAAUGUC        U     A^        CC  ACC     GAUUAC 
 .       110       100        90        80        70        60