Mir-137-P3a-v1

MirGeneDB ID

Gmo-Mir-137-P3a-v1

Family name

MIR-137 (all species)

Seed

UAUUGCU

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-137-2

Paralogues

Gmo-Mir-137-P1b-v1 Gmo-Mir-137-P1b-v2 Gmo-Mir-137-P3a-v2 Gmo-Mir-137-P3b-v1 Gmo-Mir-137-P3b-v2

Orthologues

Aca-Mir-137-P3-v1 Aca-Mir-137-P3-v2 Ami-Mir-137-P3-v1 Ami-Mir-137-P3-v2 Asu-Mir-137 Bfl-Mir-137 Cbr-Mir-137 Cel-Mir-137 Cgi-Mir-137 Cli-Mir-137-P3 Cpi-Mir-137-P3-v1 Cpi-Mir-137-P3-v2 Cte-Mir-137 Dan-Mir-137 Dma-Mir-137 Dme-Mir-137 Dmo-Mir-137 Dpu-Mir-137 Dsi-Mir-137 Dya-Mir-137 Ebu-Mir-137 Esc-Mir-137 Gga-Mir-137-P3-v1 Gga-Mir-137-P3-v2 Gja-Mir-137-P3 Hme-Mir-137 Isc-Mir-137 Lan-Mir-137 Lch-Mir-137-P3 Lgi-Mir-137 Loc-Mir-137-P3-v1 Loc-Mir-137-P3-v2 Mal-Mir-137-P3a-v1 Mal-Mir-137-P3a-v2 Mdo-Mir-137-P3-v1 Mdo-Mir-137-P3-v2 Mun-Mir-137-P3 Oan-Mir-137-P3-v1 Oan-Mir-137-P3-v2 Obi-Mir-137 Pbv-Mir-137-P3-v1 Pbv-Mir-137-P3-v2 Pma-Mir-137-o3 Sha-Mir-137-P3 Sko-Mir-137 Spu-Mir-137 Xbo-Mir-137

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_1590: 3341-3399 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-137-P3a-v1)

Mir-137-P3a-v2 GeneScaffold_1590: 3340-3400 [+] UCSC Ensembl
Mir-137-P3a-v1 GeneScaffold_1590: 3341-3399 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAGGAAUGUCUGAGUGCUCCGUCUCGGCCACGGGUAUUCUUGGGUUGAUAAUACAGAUGUUGAUGUUAUUGCUUGAGAAUACGCGUAGCUGAGGGGAAGCCAUGGCCGACGGACAGAG

Get precursor sequence

Structure

        10           20        30        40        50         
GGAGGAAUGUCUGAGUGC---|  G       C   G       UG   U       CAGA 
                     UCC UCUCGGC ACG GUAUUCU  GGU GAUAAUA    U
                     AGG GGAGUCG UGC CAUAAGA  UCG UUAUUGU    G
GAGACAGGCAGCCGGUACCGA^  -       A   G       GU   -       AGUU 
       110       100         90        80         70        60