MirGeneDB 2.1
MirGeneDB ID

Gja-Mir-221-P1b

Family name MIR-221 (all species)
Seed GCUACAU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-221-P1a  Gja-Mir-221-P2a 
Orthologues Aca-Mir-221-P1b  Ami-Mir-221-P1b  Cli-Mir-221-P1b  Cmi-Mir-221-P1b  Cpi-Mir-221-P1b  Dre-Mir-221-P1b  Gga-Mir-221-P1b  Lch-Mir-221-P1b  Loc-Mir-221-P1b  Mun-Mir-221-P1b  Oan-Mir-221-P1b  Pbv-Mir-221-P1b  Spt-Mir-221-P1b  Sto-Mir-221-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015224181.1: 293-356 [+]
Precursor
(pre-Mir +30nt flank)
AGAAGCAUUCAAGAUCUGAUGUGCGCGGGCUGCUCAGUAGUCAGUGUAGGAUCUGUCUGACCACACGAACAGCUACAUCUGAUUACUGGGUCUCCUGCGCCAUCACCGCCCACAGUCCCCAAAG
Get precursor sequence
Structure
        10           20        30        40         50        60  
AGAAGCAUUCAAGAUCU---|   U       CU             -     GAU    CUGAC 
                    GAUG GCGCGGG  GCUCAGUAGUCAG UGUAG   CUGU     C
                    CUAC CGCGUCC  UGGGUCAUUAGUC ACAUC   GACA     A
GAAACCCCUGACACCCGCCA^   -       UC             U     ---    AGCAC 
  120       110        100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-221-P1b_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGCUCAGUAGUCAGUGUAGGAUCUGU -26
Get sequence
Mature sequence

Gja-Mir-221-P1b_3p (predicted)
mirBase accessionNone
Sequence 
40- AGCUACAUCUGAUUACUGGGUCUC -64
Get sequence