Mir-221-P1b

MirGeneDB ID

Cmi-Mir-221-P1b

Family name

MIR-221 (all species)

Seed

GCUACAU

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-221-P1a Cmi-Mir-221-P2a

Orthologues

Aca-Mir-221-P1b Ami-Mir-221-P1b Cli-Mir-221-P1b Cpi-Mir-221-P1b Dre-Mir-221-P1b Gga-Mir-221-P1b Gja-Mir-221-P1b Lch-Mir-221-P1b Loc-Mir-221-P1b Mun-Mir-221-P1b Oan-Mir-221-P1b Pbv-Mir-221-P1b Spt-Mir-221-P1b Sto-Mir-221-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635856.1: 1950754-1950817 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGGACACUGGAGGAAGGGUGUUGAUCGGGUGCUCAGUAGCUAGUGUAGGAUCUGUUUUGUCAUUUCUACAGCUACAUCUGGUUACUGGGUCUCUGAUCACAUCCCUAAGCGACUAAAGCUACU

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Structure

        10           20        30        40         50        60  
CUGGACACUGGAGGAAG---|    U      GU             -     GAU    UUUGU 
                    GGUGU GAUCGG  GCUCAGUAGCUAG UGUAG   CUGU     C
                    CUACA CUAGUC  UGGGUCAUUGGUC ACAUC   GACA     A
UCAUCGAAAUCAGCGAAUCC^    -      UC             U     ---    UCUUU 
  120       110       100         90        80           70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-221-P1b_5p*

mirBase accession

None

Sequence

0- UGCUCAGUAGCUAGUGUAGGAUCUGU -26

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Mature sequence

Cmi-Mir-221-P1b_3p

mirBase accession

None

Sequence

40- AGCUACAUCUGGUUACUGGGUCUC -64

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