| MirGeneDB ID | Ete-Mir-339 |
|---|
| Family name |
MIR-339 (all species) |
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| Seed |
CCCUGUC |
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| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bta-Mir-339
Cfa-Mir-339
Cpo-Mir-339
Dno-Mir-339
Hsa-Mir-339
Mml-Mir-339
Mmu-Mir-339
Ocu-Mir-339
Rno-Mir-339
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(echTel2) |
JH980314: 546481-546536 [-]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
CCCGGUGCUGGGACCCCGAGGUAGCCGCAGUCCCUGUCCUCCAGGAGCUCACGUAACCAGCUGUGAGCUCCCCGAGGGCAGGGCCCGCGUCUGCUUCCGAGCUGCGCCGAGCCCGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCCGGUGCUGGGACCCC--| C AGU CA UAA
GAGGUAG CGC CCCUGUCCUC GGAGCUCACG C
CUUCGUC GCG GGGACGGGAG CCUCGAGUGU C
GGCCCGAGCCGCGUCGAGC^ U CCC CC CGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ete-Mir-339_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCCCUGUCCUCCAGGAGCUCACG -23
Get sequence
|
|---|
| Star sequence |
Ete-Mir-339_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
33- UGAGCUCCCCGAGGGCAGGGCCC -56
Get sequence
|
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