| MirGeneDB ID | Esc-Novel-24-v3 |
|---|
| Family name |
COL-NOVEL-24 (all species) |
|---|
| Seed |
AUUUAGU |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
|---|
| Paralogues |
Esc-Novel-24-v1
Esc-Novel-24-v2
|
|---|
| Orthologues |
Obi-Novel-24-v3
Ovu-Novel-24-v3
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-24-v1_pre_SRIE01049505.1:4983878-4984017: 40-101 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGUCAGAAGGAAGCUUGUUUUCGUUCGCUAGCUGGUUAUGUGAACUAAGAUUCAUUUCUUUAUCAAAUAUUUAGUGCACAUAACUGGCUGACGAACAAAGCGCUAUUCGUCCAAUCACCGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGUCAGAAGGAAGCUU---| C C UG A - CAUUUC
GUUUU GUUCG UAGC GUUAUGUG ACUAAG AUU \
CGAAA CAAGC GUCG CAAUACAC UGAUUU UAA U
CGCCACUAACCUGCUUAUCG^ - A GU G A ACUAUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Esc-Novel-24-v3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCUGGUUAUGUGAACUAAGAUUC -24
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-24-v3_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UAUUUAGUGCACAUAACUGGCUGA -62
Get sequence
|
|---|
