MirGeneDB 2.1
MirGeneDB ID

Efe-Mir-279-o20

Family name MIR-279 (all species)
Seed GACUAGA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-279-o14  Efe-Mir-279-o15  Efe-Mir-279-o16  Efe-Mir-279-o17  Efe-Mir-279-o18  Efe-Mir-279-o19 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.1381559: 71-129 [-]
Precursor
(pre-Mir +30nt flank)
NNNNNNNNNNAGCGAGGCAGAUUAUCGGCGGACGGGUGUAUUUCUCGUCCAUGUUGGCGAUCUAUCAUGACUAGAUCUACACUCGUCCGUCGAGCUCUGGGACCAACGAGGUGUGCAUU
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Structure
        10           20        30        40        50         
NNNNNNNNNNAGCGAGG---|   UUA                UU   C   C   UUGGC 
                    CAGA   UCGGCGGACGGGUGUA  UCU GUC AUG     G
                    GUCU   AGCUGCCUGCUCACAU  AGA CAG UAC     A
UUACGUGUGGAGCAACCAGG^   CG-                CU   U   -   UAUCU 
       110       100         90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Efe-Mir-279-o20_5p* (predicted)
mirBase accessionNone
Sequence 
0- GACGGGUGUAUUUCUCGUCCAUG -23
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Mature sequence

Efe-Mir-279-o20_3p
mirBase accessionNone
Sequence 
37- UGACUAGAUCUACACUCGUCCG -59
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