MirGeneDB 2.1
MirGeneDB ID

Efe-Mir-279-o14

Family name MIR-279 (all species)
Seed GACUAGA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-279-o15  Efe-Mir-279-o16  Efe-Mir-279-o17  Efe-Mir-279-o18  Efe-Mir-279-o19  Efe-Mir-279-o20 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Csc-Mir-279-P14a  Csc-Mir-279-P14b  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.179746: 5176-5236 [+]
Precursor
(pre-Mir +30nt flank)
AUGAUGACAGAUGCUUAGGUUACUUCGUUCGACGUGUGUGAAUCUCGUACGUGUCGUCGUUUGCUAUACAUGACUAGAUACACACUCGUCUACGGAGGUAACGAUUAUCCCGACAACUGGC
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Structure
        10         20         30        40        50        60 
AUGAUGACAGAUGCUUAG-       -|  UC    U     A    C  A    UCGUCGU 
                   GUUACUU CGU  GACG GUGUG AUCU GU CGUG       \
                   CAAUGGA GCA  CUGC CACAC UAGA CA GUAC       U
CGGUCAACAGCCCUAUUAG       G^  U-    U     A    U  -    AUAUCGU 
 .       110       100         90        80         70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Efe-Mir-279-o14_5p* (predicted)
mirBase accessionNone
Sequence 
0- GACGUGUGUGAAUCUCGUACGUG -23
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Mature sequence

Efe-Mir-279-o14_3p
mirBase accessionNone
Sequence 
40- UGACUAGAUACACACUCGUCU -61
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