Mir-9-P13

MirGeneDB ID

Dsi-Mir-9-P13

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Fruit fly (Drosophila simulans)

MiRBase ID

Paralogues

Dsi-Mir-9-P9 Dsi-Mir-9-P10 Dsi-Mir-9-P11 Dsi-Mir-9-P12-v1 Dsi-Mir-9-P12-v2

Orthologues

Aae-Mir-9-P13 Bfl-Mir-9 Bge-Mir-9-o13 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P13 Dme-Mir-9-P13 Dmo-Mir-9-P13 Dya-Mir-9-P13 Esc-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Npo-Mir-9 Obi-Mir-9 Ovu-Mir-9 Pmi-Mir-9 Spu-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Diptera

Node of Origin (family)

Bilateria

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

2L: 16226513-16226573 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGUUUCUCUUUUGUUUGCAUAUUAUUUGCUCUUUGGUGAUUUUAGCUGUAUGGUGUAUAAGUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGUUUCUGCAUUAUGCUUGAGUUGAU

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Structure

        10        20          30        40        50        60
AUGUUUCUCUUUUGUUUGCAU--|       CUC         UUU    G    GUGUAU 
                       AUUAUUUG   UUUGGUGAU   AGCU UAUG      A
                       UGGUAAAC   AAACCAUUA   UCGA AUAC      A
UAGUUGAGUUCGUAUUACGUCUU^       CAA         UU-    G    CUUAUG 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

He	Wh

Mature sequence

Dsi-Mir-9-P13_5p

mirBase accession

None

Sequence

0- UCUUUGGUGAUUUUAGCUGUAUG -23

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Star sequence

Dsi-Mir-9-P13_3p*

mirBase accession

None

Sequence

39- UAGAGCUUUAUUACCAAAAACC -61

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