MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-203-v2

Family name MIR-203 (all species)
Seed GAAAUGU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-203
Paralogues Cpo-Mir-203-v1 
Orthologues Aca-Mir-203-v2  Ami-Mir-203-v2  Bta-Mir-203-v2  Cfa-Mir-203-v2  Cpi-Mir-203-v2  Dno-Mir-203-v2  Ete-Mir-203-v2  Gga-Mir-203-v2  Gja-Mir-203-v2  Hsa-Mir-203-v2  Lch-Mir-203  Loc-Mir-203-v2  Mdo-Mir-203-v2  Mml-Mir-203-v2  Mmu-Mir-203-v2  Mun-Mir-203-v2  Oan-Mir-203-v2  Ocu-Mir-203-v2  Pbv-Mir-203-v2  Rno-Mir-203-v2  Sha-Mir-203-v2  Spt-Mir-203  Sto-Mir-203-v2  Tgu-Mir-203-v2  Xtr-Mir-203-v2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_111: 3483108-3483167 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-203-v2)		 Mir-203-v1 scaffold_111: 3483108-3483167 [+] UCSC
Mir-203-v2 scaffold_111: 3483108-3483167 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UGAGGUGCCGCAGACUUGCCCGCCGGGUCCAGUGGUUCUUAACAGUUCAACAGUUCUGUAGGGCAAUUGUGAAAUGUUUAGGACCACUAGACCCGGCGCGCUCGGCGACGGCGGGGGCGA
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Structure
        10          20        30        40        50          
UGAGGUGCCGCAGACUU--| C         C         U    G    A  GUUCUGU 
                   GC CGCCGGGUC AGUGGUUCU AACA UUCA CA       \
                   CG GCGGCCCAG UCACCAGGA UUGU AAGU GU       A
AGCGGGGGCGGCAGCGGCU^ C         A         U    A    -  UAACGGG 
.       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cpo-Mir-203-v2_5p*
mirBase accessionMIMAT0047097
Sequence 
0- AGUGGUUCUUAACAGUUCAACA -22
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Mature sequence

Cpo-Mir-203-v2_3p
mirBase accessionMIMAT0047098
Sequence 
39- UGAAAUGUUUAGGACCACUAG -60
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