| MirGeneDB ID | Cmi-Mir-27-P4 |
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| Family name |
MIR-27 (all species) |
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| Seed |
UCACAGU |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
|
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| Paralogues |
Cmi-Mir-27-P2
Cmi-Mir-27-P3
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| Orthologues |
Dre-Mir-27-P4a
Gmo-Mir-27-P4a
Gmo-Mir-27-P4b
Lch-Mir-27-P4
Loc-Mir-27-P4
Mal-Mir-27-P4a
Mal-Mir-27-P4b
Sto-Mir-27-P4
Tni-Mir-27-P4a
Tni-Mir-27-P4b
Xla-Mir-27-P4c
Xla-Mir-27-P4d
Xtr-Mir-27-P4
|
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635918.1: 1565842-1565904 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUCCCCAUAGCCUGAGCUCUGUGCUGGUAUAGAGCUUAGCCAUUUGGAGAGCAGUAUCAUUGGAGAGCUUUGUUCACAGUGGCUAAGUUUCAUACCCAGAGAGAAACAACGCAUUGUAUGAUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AUCCCCAUAGCCUGAGC----| G CU AG U GA AGUAUCAUU
UCU UG GGUAU AGCUUAGCCAUU G GAGC \
AGA AC CCAUA UUGAAUCGGUGA C CUUG G
CUAGUAUGUUACGCAACAAAG^ G -- CU - A- UUUCGAGAG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | No |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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| Star sequence |
Cmi-Mir-27-P4_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGAGCUUAGCCAUUUGGAGAGC -22
Get sequence
|
|---|
| Mature sequence |
Cmi-Mir-27-P4_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UUCACAGUGGCUAAGUUUCAU -63
Get sequence
|
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