| MirGeneDB ID | Cmi-Mir-19-P1c |
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| Family name |
MIR-19 (all species) |
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| Seed |
GUGCAAA |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
Cmi-Mir-19-P1a-v1
Cmi-Mir-19-P1a-v2
Cmi-Mir-19-P2a
Cmi-Mir-19-P2b
Cmi-Mir-19-P2c
Cmi-Mir-19-P2d
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| Orthologues |
Sto-Mir-19-P1c
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635856.1: 9595282-9595339 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAAUGGCAUGGACUCUUGCAACUCUCUGCCAGUUUUGCAGUUUUGUACUACAGGAAGAAGUGACCUGUGCAAAUCUAUGCAAAACUGGUAGGGAACUGUACUACUGCUCAUUUUUAUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAAUGGCAUGGACUCUU-- AC GU--| ACU AAGA
GCA UCUCUGCCAGUUUUGCA UUUGU ACAGG \
UGU AGGGAUGGUCAAAACGU AAACG UGUCC A
GUAUUUUUACUCGUCAUCA CA AUCU^ --- AGUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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| Star sequence |
Cmi-Mir-19-P1c_5p* |
| mirBase accession | None |
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| Sequence |
0- AGUUUUGCAGUUUUGUACUACAGG -24
Get sequence
|
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| Mature sequence |
Cmi-Mir-19-P1c_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UGUGCAAAUCUAUGCAAAACUGG -58
Get sequence
|
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