MirGeneDB 2.1
MirGeneDB ID

Cli-Mir-1329-v2

Family name MIR-1329 (all species)
Seed CAGUGAU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-1329
Paralogues Cli-Mir-1329-v1 
Orthologues Aca-Mir-1329-v2  Ami-Mir-1329  Bta-Mir-1329  Cmi-Mir-1329  Cpi-Mir-1329-v2  Ebu-Mir-1329  Gga-Mir-1329-v2  Gja-Mir-1329-v2  Mdo-Mir-1329  Mun-Mir-1329  Oan-Mir-1329-v2  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v2  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold102: 20718009-20718067 [+]
Clustered miRNAs
(< 50kb from Mir-1329-v2)		 Mir-1329-v1 scaffold102: 20718008-20718068 [+]
Mir-1329-v2 scaffold102: 20718009-20718067 [+]
Precursor
(pre-Mir +30nt flank)
AGAGACAAGUCUUGGUCUGGUUGUAGAGAUACAGUGAUCAGGUUACGAUGGAUUUCUCAAGUAACAACCUCGUAGCUUGAUCACGAUAUCCCUAUGACUUGAGAAACAACAGGUUUAAC
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Structure
        10          20        30        40        50         
AGAGACAAGUCUUGGUCU--|  UG   A    CA               U  AUUUCUC 
                    GGU  UAG GAUA  GUGAUCAGGUUACGA GG       A
                    UCA  AUC CUAU  CACUAGUUCGAUGCU CC       A
CAAUUUGGACAACAAAGAGU^  GU   C    AG               -  AACAAUG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Cl Cl Cl Cl Cl To
Mature sequence

Cli-Mir-1329-v2_5p
mirBase accessionMIMAT0038672
Sequence 
0- ACAGUGAUCAGGUUACGAUGGAU -23
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Star sequence

Cli-Mir-1329-v2_3p*
mirBase accessionMIMAT0038673
Sequence 
37- CCUCGUAGCUUGAUCACGAUAU -59
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