MirGeneDB 2.1
MirGeneDB ID

Cel-Mir-2-o5

Family name MIR-2 (all species)
Seed UUUCAUU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-797
Paralogues Cel-Mir-2-o3  Cel-Mir-2-o4  Cel-Mir-2-P11 
Orthologues Aae-Mir-2-P5a  Aae-Mir-2-P5b  Dan-Mir-2-P5  Dme-Mir-2-P5  Dmo-Mir-2-P5  Dsi-Mir-2-P5  Dya-Mir-2-P5 
Node of Origin (locus) C. elegans
Node of Origin (family) Protostomia
Genome context
(ce11)		 chrX: 4757123-4757186 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o5)		 Mir-279-o10 chrX: 4756991-4757052 [+] UCSC Ensembl
Mir-2-o5 chrX: 4757123-4757186 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGAGCACGAUGACCCCGUCCAAUGGACGAUAUCACAGCAAUCACAAUGAGAAGAAUACAUCUAGAUACUCUUUUCAUUGGUUUCUGUGAAAUCGUAUUUGAAUGGAAAGUUUUAUAUUGAAGA
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Structure
        10        20           30        40        50        60  
UCGAGCACGAUGACCCCGUC---|  UGG     A      C  UCA           AUACAU 
                       CAA   ACGAU UCACAG AA   CAAUGAGAAGA      C
                       GUU   UGCUA AGUGUC UU   GUUACUUUUCU      U
AGAAGUUAUAUUUUGAAAGGUAA^  UA-     A      -  UG-           CAUAGA 
  120       110       100         90          80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-2-o5_5p*
mirBase accessionMIMAT0004232
Sequence 
0- UAUCACAGCAAUCACAAUGAGAAGA -25
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Proposed targets microrna.org: MIMAT0004232
TargetScanWorm: cel-miR-797
Mature sequence

Cel-Mir-2-o5_3p
mirBase accessionMIMAT0015241
Sequence 
41- UUUUCAUUGGUUUCUGUGAAAUC -64
Get sequence
Proposed targets microrna.org: MIMAT0015241