Mir-10-P3n

MirGeneDB ID

Cel-Mir-10-P3n

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-mir-237

Paralogues

Cel-Mir-10-P1 Cel-Mir-10-P2 Cel-Mir-10-P3m

Orthologues

Aae-Mir-10-P3 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Cbr-Mir-10-P3n Cgi-Mir-10-P3 Cin-Mir-10-P3 Cte-Mir-10-P3 Dan-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dsi-Mir-10-P3 Dya-Mir-10-P3 Esc-Mir-10-P3 Isc-Mir-10-P3 Lan-Mir-10-P3 Lgi-Mir-10-P3 Nve-Mir-10 Obi-Mir-10-P3 Ovu-Mir-10-P3 Pmi-Mir-10-P3 Sko-Mir-10-P3 Spu-Mir-10-P3 Tca-Mir-10-P3 Xbo-Mir-10-P3

Node of Origin (locus)

Caenorhabditis

Node of Origin (family)

Eumetazoa

Genome context
(ce11)

chrX: 8154099-8154157 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAAGCUGUUCAAAACUUCUACAUUGCGUGGUCCCUGAGAAUUCUCGAACAGCUUCAAAGUGUUCAAGCUGUCGAGUUUUGUCAAGGACCAAACAAUAGAAGAUCACUUGGGAACAAUCA

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Structure

        10        20          30        40        50         
CAAGCUGUUCAAAACUUCUAC--|   CG      C   G  UU     A     UCAAA 
                       AUUG  UGGUCC UGA AA  CUCGA CAGCU     G
                       UAAC  ACCAGG ACU UU  GAGCU GUCGA     U
ACUAACAAGGGUUCACUAGAAGA^   AA      A   G  UU     -     ACUUG 
       110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Wt	Da	Ea	Mi	Yo	Yo

Mature sequence

Cel-Mir-10-P3n_5p

mirBase accession

MIMAT0000292

Sequence

0- UCCCUGAGAAUUCUCGAACAGCU -23

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Proposed targets

microrna.org: MIMAT0000292
TargetScanWorm: cel-miR-237

Star sequence

Cel-Mir-10-P3n_3p*

mirBase accession

MIMAT0020333

Sequence

37- CUGUCGAGUUUUGUCAAGGACC -59

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