Mir-10-P3m

MirGeneDB ID

Cel-Mir-10-P3m

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-lin-4

Paralogues

Cel-Mir-10-P1 Cel-Mir-10-P2 Cel-Mir-10-P3n

Orthologues

Aae-Mir-10-P3 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Cbr-Mir-10-P3m Cgi-Mir-10-P3 Cin-Mir-10-P3 Cte-Mir-10-P3 Dan-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dsi-Mir-10-P3 Dya-Mir-10-P3 Esc-Mir-10-P3 Isc-Mir-10-P3 Lan-Mir-10-P3 Lgi-Mir-10-P3 Nve-Mir-10 Obi-Mir-10-P3 Ovu-Mir-10-P3 Pmi-Mir-10-P3 Sko-Mir-10-P3 Spu-Mir-10-P3 Tca-Mir-10-P3 Xbo-Mir-10-P3

Node of Origin (locus)

Caenorhabditis

Node of Origin (family)

Eumetazoa

Genome context
(ce11)

chrII: 5902269-5902329 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGGUUUAUGAGUUUAUGCUUCCGGCCUGUUCCCUGAGACCUCAAGUGUGAGUGUACUAUUGAUGCUUCACACCUGGGCUCUCCGGGUACCAGGACGGUUUGAGCAGAUCUUUUUUUCUGU

Get precursor sequence

Structure

        10        20          30         40        50         
UUGGUUUAUGAGUUUAUGCUU--   G    UU-|  U    C    A      GUGUACU 
                       CCG CCUG   CCC GAGA CUCA GUGUGA       A
                       GGC GGAC   GGG CUCU GGGU CACACU       U
UGUCUUUUUUUCUAGACGAGUUU   A    CAU^  C    C    C      UCGUAGU 
 .       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Wt	Da	Ea	Mi	Yo	Yo

Mature sequence

Cel-Mir-10-P3m_5p

mirBase accession

MIMAT0000002

Sequence

0- UCCCUGAGACCUCAAGUGUGA -21

Get sequence

Proposed targets

microrna.org: MIMAT0000002
TargetScanWorm: cel-lin-4

Star sequence

Cel-Mir-10-P3m_3p*

mirBase accession

MIMAT0015092

Sequence

39- ACACCUGGGCUCUCCGGGUACC -61

Get sequence

Proposed targets

microrna.org: MIMAT0015092