MirGeneDB 2.1
MirGeneDB ID

Cbr-Mir-279-o9

Family name MIR-279 (all species)
Seed GACUAGA
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-61
Paralogues Cbr-Mir-279-o7  Cbr-Mir-279-o8a  Cbr-Mir-279-o8b  Cbr-Mir-279-o10 
Orthologues Bpl-Mir-279  Cel-Mir-279-o9  Cgi-Mir-279  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lpo-Mir-279-P9  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(CB4)		 V: 9339608-9339664 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-o9)		 Mir-2-P11 V: 9339455-9339515 [-] Ensembl
Mir-279-o9 V: 9339608-9339664 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUACUCCUGUACUUGAUCGGUGUCUCGAGCCGAGUUAAGGCUAAUAGUCCUUCCGGUGUAUGGUAAUGACUAGAACCUUGACUCUGCUCGAGUUACUGAGCUCUUUGACCCCGCCCC
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Structure
        10          20        30        40        50        
CUACUCCUGUACUUGAU--|    U       C         CUAA     CUUCCGGU 
                   CGGUG CUCGAGC GAGUUAAGG    UAGUC        G
                   GUCAU GAGCUCG CUCAGUUCC    AUCAG        U
CCCCGCCCCAGUUUCUCGA^    U       U         AAG-     UAAUGGUA 
     110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-279-o9_5p*
mirBase accessionNone
Sequence 
0- CGAGUUAAGGCUAAUAGUCCUU -22
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Mature sequence

Cbr-Mir-279-o9_3p
mirBase accessionMIMAT0001302
Sequence 
36- UGACUAGAACCUUGACUCUGC -57
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