MirGeneDB 2.1
MirGeneDB ID

Cbr-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-60
Paralogues
Orthologues Bpl-Mir-1993  Cel-Mir-1993  Cgi-Mir-1993  Cte-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Esc-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Npo-Mir-1993  Obi-Mir-1993  Ovu-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(CB4)		 II: 9414189-9414250 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUAAUAUUCUAGAAACCUCUUGUUCUUGAGCUGGAAAGGUGACAUAAAAUCAUGUCCAAGCACGCGAUAUUAUGCACAUUUUCUAGUCCAAGACUUGAUUAAUAAUGGUUUCAUUUUUGA
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Structure
        10           20        30        40         50        60
UAUUAAUAUUCUAGAAACC---| UU  U    AG        -   A     A   AUGUCC 
                      UC  GU CUUG  CUGGAAAG GUG CAUAA AUC      A
                      AG  CA GAAC  GAUCUUUU CAC GUAUU UAG      A
AGUUUUUACUUUGGUAAUAAUU^ UU  -    CU        A   -     A   CGCACG 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-1993_5p*
mirBase accessionNone
Sequence 
0- AGCUGGAAAGGUGACAUAAAAUC -23
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Mature sequence

Cbr-Mir-1993_3p
mirBase accessionMIMAT0000479
Sequence 
39- UAUUAUGCACAUUUUCUAGUCCA -62
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