| MirGeneDB ID | Bla-Novel-5 |
|---|
| Family name |
BRA-NOVEL-5 (all species) |
|---|
| Seed |
CCCUGGU |
|---|
| Species |
European lancelet (Branchiostoma lanceolatum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bfl-Novel-5
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(BraLan2) |
Sc0000058: 970176-970234 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGAGGCUACAGCACAGUUCCCAGGACCAGUGACGGCUCCGCAAGCAGGGGCUGUGAGCCAGGCUAGCCCCUGGUUGUUGUGCCGAUACCUGGCCUUGUGGAAAACACACCUUCUGUCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAGGCUACAGCACAGU- - A -| A UCC G GUGAG
UCC CAGG CCA GUG CGGC GCAA CAGGGGCU C
AGG GUUC GGU CAU GCCG UGUU GUCCCCGA C
ACCUGUCUUCCACACAAA U C C^ A UGU G UCGGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bla-Novel-5_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GACGGCUCCGCAAGCAGGGGCU -22
Get sequence
|
|---|
| Mature sequence |
Bla-Novel-5_3p |
| mirBase accession | None |
|---|
| Sequence |
36- CCCCUGGUUGUUGUGCCGAUACC -59
Get sequence
|
|---|
