| MirGeneDB ID | Bfl-Novel-5 |
|---|
| Family name |
BRA-NOVEL-5 (all species) |
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| Seed |
CCCUGGU |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bla-Novel-5
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049995.1: 4326931-4326989 [+]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
UUUAUAUAUUGAACAGUUCCCAGGAUCAGUGACGGCUCCAUAAGCAGGGGCUGUGUGCCAGGCUAGCCCCUGGUUGUUGGGCCGAUACCUGGCUUUGUGGAAAAUACAUCCUAAACUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUAUAUAUUGAACAGU- - AU -| A C G GUGUG
UCC CAGG CA GUG CGGCUC AUAA CAGGGGCU C
AGG GUUU GU CAU GCCGGG UGUU GUCCCCGA C
ACUCAAAUCCUACAUAAA U CG C^ A U G UCGGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Bfl-Novel-5_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GACGGCUCCAUAAGCAGGGGCU -22
Get sequence
|
|---|
| Mature sequence |
Bfl-Novel-5_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- CCCCUGGUUGUUGGGCCGAUACC -59
Get sequence
|
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