| MirGeneDB ID | Bla-Novel-3 |
|---|
| Family name |
BRA-NOVEL-3 (all species) |
|---|
| Seed |
UCUUGCU |
|---|
| Species |
European lancelet (Branchiostoma lanceolatum) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
|---|
| Orthologues |
Bfl-Novel-3
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(BraLan2) |
Sc0000058: 970724-970780 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGGGUCCCCGAAAUAAAACCCAUGGAAGGGAACGGCUCUGCAAGCCGGGGAUGAAACAAAACUAUCUCUUGCUUGAAGAGUCGUACUCGGCCUUGGGUGCUUUUCUUCACAACACAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGGGUCCCCGAAAUAAA--| U AA A G C GAAAC
ACCCA GG GGG ACGGCUCU CAAGC GGGGAU \
UGGGU CC CUC UGCUGAGA GUUCG UCUCUA A
CACACAACACUUCUUUUCG^ U GG A A U UCAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bla-Novel-3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AACGGCUCUGCAAGCCGGGGAU -22
Get sequence
|
|---|
| Mature sequence |
Bla-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
35- CUCUUGCUUGAAGAGUCGUACU -57
Get sequence
|
|---|
