| MirGeneDB ID | Bfl-Novel-3 |
|---|
| Family name |
BRA-NOVEL-3 (all species) |
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| Seed |
UCUUCCU |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bla-Novel-3
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049995.1: 4326455-4326514 [+]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
CCCCGAAAUAAAUCAAAGCCCAUGGCAGGGUACGGCUCUACAAGCCGGGGAUGAUGAAACAAAACUAUCUCUUCCUUGAAGAGUCGUACCUGGCUUUGGGUGCCGUCUUCACGUCGCUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCCCGAAAUAAAUCAAA--| U A A CC GAUGAA
GCCCA GGC GGGUACGGCUCU CAAG GGGGAU A
UGGGU UCG UCCAUGCUGAGA GUUC UCUCUA C
ACUCGCUGCACUUCUGCCG^ U G A CU UCAAAA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bfl-Novel-3_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UACGGCUCUACAAGCCGGGGAU -22
Get sequence
|
|---|
| Mature sequence |
Bfl-Novel-3_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- CUCUUCCUUGAAGAGUCGUACC -60
Get sequence
|
|---|
