| MirGeneDB ID | Bla-Mir-135-P6 |
|---|
| Family name |
MIR-135 (all species) |
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| Seed |
AUGGCUU |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-135-P5
|
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| Orthologues |
Bfl-Mir-135-P6
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(BraLan2) |
Sc0000129: 104052-104110 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCAGUGUGUCUGUGUGUCUACCUCGUGUUCUAUGGCUUUCAUCCUAUGUGAAUGUUAUCGCACAUGUUCACAUUGGUGGAAGUCAAAGAAGACGUGUGUGGAAACUCACCGCUACUAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCAGUGUGUCUGUGUGU- CU-| G A CU UGUUAU
CUAC CGU UUCU UGGCUUUCAUC AUGUGAA C
GGUG GCA AAGA ACUGAAGGUGG UACACUU G
CAAUCAUCGCCACUCAAA UGU^ G A U- GUACAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Bla-Mir-135-P6_5p |
| mirBase accession | None |
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| Sequence |
0- UAUGGCUUUCAUCCUAUGUGAA -22
Get sequence
|
|---|
| Star sequence |
Bla-Mir-135-P6_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CACAUUGGUGGAAGUCAAAGA -59
Get sequence
|
|---|
