| MirGeneDB ID | Bla-Mir-135-P5 |
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| Family name |
MIR-135 (all species) |
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| Seed |
AUGGCUU |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-135-P6
|
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| Orthologues |
Bfl-Mir-135-P5
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(BraLan2) |
Sc0000129: 103824-103881 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAUAGAUAUUCCCUAUUCUGCCCGUGUCCAAUGGCUUUCAUCCUUUGUGAAUGUCUGAGCACAGUUCACAUCGAUGGGGGUUAUUGGUCAAGAGUAAGACUUGUGGCUCCGCUAUAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAUAGAUAUUCCCUAU- -| CCG U UU CUU UGUCUG
UC UGC UG CCAAUGGCU CAUC UGUGAA \
AG AUG AC GGUUAUUGG GUAG ACACUU A
GAUAUCGCCUCGGUGUUC A^ AGA U GG CU- GACACG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Bla-Mir-135-P5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAUGGCUUUCAUCCUUUGUGAA -22
Get sequence
|
|---|
| Star sequence |
Bla-Mir-135-P5_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CACAUCGAUGGGGGUUAUUGG -58
Get sequence
|
|---|
