MirGeneDB 2.1
MirGeneDB ID

Bge-Mir-279-o38

Family name MIR-279 (all species)
Seed GACUAGA
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-279-o35  Bge-Mir-279-o36  Bge-Mir-279-o37  Bge-Mir-279-o39 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) B. germanica
Node of Origin (family) Protostomia
Genome context
(Bger_2.0)		 KZ614992.1: 537892-537951 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAACACAAGUGUCAAGUCCUUACAGCCUGUGAUGAGUGUAGGUCUGGUGCACAUGUGUUAAAAAGCUGUGACUAGAUCCACACUCAUCACUGGAGGUGAGAUACAUCUGCGGGGUGAACC
Get precursor sequence
Structure
        10          20        30        40        50          
CAACACAAGUGUCAAGUC--|    AG  U           A        G    UGUGUU 
                    CUUAC  CC GUGAUGAGUGU GGUCUGGU CACA      \
                    GAGUG  GG CACUACUCACA CUAGAUCA GUGU      A
CCAAGUGGGGCGUCUACAUA^    GA  U           C        -    CGAAAA 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Ad Ny Ny Ny Ny Ny Ny Ny Ny Ov Co Co Em Em Em Em Em Em Em Em Em Em No No
Star sequence

Bge-Mir-279-o38_5p*
mirBase accessionNone
Sequence 
0- GAUGAGUGUAGGUCUGGUGCACA -23
Get sequence
Mature sequence

Bge-Mir-279-o38_3p
mirBase accessionNone
Sequence 
38- UGACUAGAUCCACACUCAUCAC -60
Get sequence