| MirGeneDB ID | Xtr-Novel-4 |
|---|
| Family name |
XEN-NOVEL-4 (all species) |
|---|
| Seed |
CCACUAG |
|---|
| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Xla-Novel-4-P1
Xla-Novel-4-P2
|
|---|
| Node of Origin (locus) |
Xenopus
|
|---|
| Node of Origin (family) |
Xenopus
|
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Genome context
(xenTro9_add) |
chr7: 62852538-62852594 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
ACUUGCUUACCUCUUGCAGUAACUAAGCUCACCACUAGAGGCUGCUGCACUGCAGGCUACAAAUGCUGCAGCGCCACCUGGUGGAGAGUUGAGGCUGCCAGUUUCAGAGGGAAAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACUUGCUUACCUCUUGCA- A- A A A-| U CU AGGCU
GUA CU AGCUC CCACUAG GGC GCUGCA GC \
CGU GA UUGAG GGUGGUC CCG CGACGU CG A
AGAAAAGGGAGACUUUGAC CG G A CA^ - -- UAAAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Xtr-Novel-4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACCACUAGAGGCUGCUGCACUGC -23
Get sequence
|
|---|
| Star sequence |
Xtr-Novel-4_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- CUGCAGCGCCACCUGGUGGAGA -57
Get sequence
|
|---|
