| MirGeneDB ID | Xla-Novel-3-P2-v1 |
|---|
| Family name |
XEN-NOVEL-3 (all species) |
|---|
| Seed |
GCUGGAG |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Novel-3-P1
Xla-Novel-3-P2-v2
|
|---|
| Orthologues |
Xtr-Novel-3
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Xenopus
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030741.1: 85525647-85525703 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CACACAGAAGUUAAUAAUUAACUCCUUCGCUGCUGGAGUGGACAUCAAUGCAUUAUUUUGCAAGGCGUUGUAGGCCUCUCCAGCACUGAAUGGGUUAAACUACCCUGAUCACCAUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACACAGAAGUUAAUAA--| C C U ACAU AUUAUU
UUAACUC UUCG UGCUGGAG GG CAAUGC \
AAUUGGG AAGU ACGACCUC CC GUUGCG U
UGUACCACUAGUCCCAUCA^ U C U GGAU GAACGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xla-Novel-3-P2-v1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCUGGAGUGGACAUCAAUGCA -22
Get sequence
|
|---|
| Star sequence |
Xla-Novel-3-P2-v1_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- CGUUGUAGGCCUCUCCAGCACU -57
Get sequence
|
|---|
