| MirGeneDB ID | Xla-Novel-19 |
|---|
| Family name |
XLA-NOVEL-19 (all species) |
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| Seed |
GAACACA |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
X. laevis
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030735.1: 119656848-119656905 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGCAGGGAGAAAUGCUGGAUGUUACUGGGCAGAACACACUGCAGACUCAUAGUUUCAUUCAGCUCCAUGGUCUGUAUUGUGUCUCAGCCUGUAAAUCUAAGUCUGAUGUGUCAGGAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGCAGGGAGAAAUGCUG----| G U A - C U AGUUUCA
GAU UUAC GGGC GA ACACA UGCAGAC CAU U
CUA AAUG UCCG CU UGUGU AUGUCUG GUA U
AAAGGACUGUGUAGUCUGAAU^ - - A C U - CCUCGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Xla-Novel-19_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGAACACACUGCAGACUCAUAG -22
Get sequence
|
|---|
| Star sequence |
Xla-Novel-19_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AUGGUCUGUAUUGUGUCUCAGC -58
Get sequence
|
|---|
