MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-9-P1d

Family name MIR-9 (all species)
Seed CUUUGGU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-9-P1c  Xla-Mir-9-P2c  Xla-Mir-9-P2d  Xla-Mir-9-P3c  Xla-Mir-9-P3d  Xla-Mir-9-P4c  Xla-Mir-9-P4d 
Orthologues Aca-Mir-9-P1  Ami-Mir-9-P1  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P1  Cfa-Mir-9-P1  Cin-Mir-9  Cmi-Mir-9-P1  Cpi-Mir-9-P1  Cpo-Mir-9-P1  Cte-Mir-9  Dno-Mir-9-P1  Esc-Mir-9  Ete-Mir-9-P1  Gga-Mir-9-P1  Gja-Mir-9-P1  Hme-Mir-9-o1  Hsa-Mir-9-P1  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P1  Lgi-Mir-9  Loc-Mir-9-P1  Mdo-Mir-9-P1  Mml-Mir-9-P1  Mmu-Mir-9-P1  Mun-Mir-9-P1  Npo-Mir-9  Oan-Mir-9-P1  Obi-Mir-9  Ocu-Mir-9-P1  Ovu-Mir-9  Pbv-Mir-9-P1  Pma-Mir-9-o1  Pmi-Mir-9  Rno-Mir-9-P1  Sha-Mir-9-P1  Spt-Mir-9-P1  Spu-Mir-9  Sto-Mir-9-P1  Tgu-Mir-9-P1  Xbo-Mir-9  Xtr-Mir-9-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030729.1: 44001647-44001708 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGAAGGCCAGGAUGGGGAGUUUGUUUCUAUCUUUGGUUAUCUAGCUGUAUGAGUGUCAAUAAGCCGUCAUAAAGCUAGAUAACCGAAAGUAGGAAUCACUUCCAAGGCGUCACCUUUGGUA
Get precursor sequence
Structure
        10           20        30        40        50        60
CCGAAGGCCAGGAUGGG---|   UU       UC               G     GUGUCA 
                    GAGU  GUUUCUA  UUUGGUUAUCUAGCU UAUGA      A
                    UUCA  UAAGGAU  AAGCCAAUAGAUCGA AUACU      U
AUGGUUUCCACUGCGGAACC^   C-       GA               A     GCCGAA 
120       110       100         90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-9-P1d_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
Co-mature sequence

Xla-Mir-9-P1d_3p
mirBase accessionNone
Sequence 
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence