| MirGeneDB ID | Xla-Mir-489-P1-v2 |
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| Family name |
MIR-489 (all species) |
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| Seed |
GACAUCA |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-489-P1-v1
Xla-Mir-489-P2-v1
Xla-Mir-489-P2-v2
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| Orthologues |
Cfa-Mir-489
Dno-Mir-489
Gja-Mir-489
Lch-Mir-489
Mmu-Mir-489
Mun-Mir-489
Ocu-Mir-489
Pbv-Mir-489
Rno-Mir-489
Sha-Mir-489
Spt-Mir-489
|
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| Node of Origin (locus) |
X. laevis
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| Node of Origin (family) |
Osteichthyes
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030734.1: 29791979-29792040 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGCGCCGAGACAAUAAUCGUGGUGGCUUAGUGGUCGUAUGUAUGACGUCAUUUGCUUGAUUAUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUGCAUGAUACGUCUGUCAUGGAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UGCGCCGAGACAAUAAUC--|UG UG C UG C UGCUUGA
G G G UUAG GUCGUAUGUAUGA GUCAUU U
C C C AAUC CGGCAUGUAUACU CAGUGA U
AAGGUACUGUCUGCAUAGUA^GU GU A GU A GGAUUUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Xla-Mir-489-P1-v2_5p* |
| mirBase accession | None |
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| Sequence |
0- UGGUCGUAUGUAUGACGUCAUU -22
Get sequence
|
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| Mature sequence |
Xla-Mir-489-P1-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UGACAUCAUAUGUACGGCUGCU -62
Get sequence
|
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