MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-130-P3a4

Family name MIR-130 (all species)
Seed AGUGCAA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xla-Mir-130-P3a3  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4 
Orthologues Aca-Mir-130-P3a  Ami-Mir-130-P3a  Cli-Mir-130-P3a  Cmi-Mir-130-P3a  Cpi-Mir-130-P3a  Gga-Mir-130-P3a  Gja-Mir-130-P3a  Lch-Mir-130-P3a  Loc-Mir-130-P3a  Mun-Mir-130-P3a  Pbv-Mir-130-P3a  Spt-Mir-130-P3a  Sto-Mir-130-P3a  Tgu-Mir-130-P3a  Xtr-Mir-130-P3a 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030725.1: 126914978-126915041 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3a4)		 Mir-130-P4a4 NC_030725.1: 126913055-126913114 [-] UCSC Ensembl
Mir-130-P1a4 NC_030725.1: 126921116-126921174 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUCCCAAUGCCCACAGCCUUAAGGAAGAGACCCUAUCAAUAUUGCCUCUGCUUUUGUGCUCAGAGUAGUAGUGCAAUAUUGCUUAUAGGGUCUUUUCCUUGAGACACCUUCAUUCUCCAACAA
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Structure
        10          20        30           40        50        60
GGUCCCAAUGCCCACAGC--                   ---|        CU     UUUGUG 
                    CUUAAGGAAGAGACCCUAU   CAAUAUUGC  CUGCU      C
                    GAGUUCCUUUUCUGGGAUA   GUUAUAACG  GAUGA      U
AACAACCUCUUACUUCCACA                   UUC^        U-     UGAGAC 
  120       110       100        90        80         70
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Eg He Re St St St St
Star sequence

Xla-Mir-130-P3a4_5p*
mirBase accessionNone
Sequence 
0- ACCCUAUCAAUAUUGCCUCUGCU -23
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Mature sequence

Xla-Mir-130-P3a4_3p
mirBase accessionNone
Sequence 
39- UAGUGCAAUAUUGCUUAUAGGGUCU -64
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