| MirGeneDB ID | Xbo-Novel-6 |
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| Family name |
XBO-NOVEL-6 (all species) |
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| Seed |
UUAGCUU |
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| Species |
Xenoturbella (Xenoturbella bocki) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. bocki
|
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| Node of Origin (family) |
X. bocki
|
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Genome context
(Xbocki_plus) |
3C-assembly_contig_1899: 5831313-5831372 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUUGAAUUCAAAACUUUGUCAGUGUUGACGCGUGUGAUAUUCAGGGCUAGCCUUUAUUCUCAGUCAAGAUUAGCUUGGGUGUCACAUGUGUUACCACUGAUCAAAUCAACGUUAUGAAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUGAAUUCAAAACUUU--| U G GC UUAUUC
GUCAGUG UGACGCGUGUGAUAUUCAGG CUA CU \
UAGUCAC AUUGUGUACACUGUGGGUUC GAU GA U
CAAAGUAUUGCAACUAAAC^ C - UA ACUGAC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Xbo-Novel-6_5p* |
| mirBase accession | None |
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| Sequence |
0- CGUGUGAUAUUCAGGGCUAGCCU -23
Get sequence
|
|---|
| Mature sequence |
Xbo-Novel-6_3p |
| mirBase accession | None |
|---|
| Sequence |
38- AUUAGCUUGGGUGUCACAUGUG -60
Get sequence
|
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