| MirGeneDB ID | Xbo-Novel-2 |
|---|
| Family name |
XBO-NOVEL-2 (all species) |
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| Seed |
CACCUUG |
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| Species |
Xenoturbella (Xenoturbella bocki) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. bocki
|
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| Node of Origin (family) |
X. bocki
|
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Genome context
(Xbocki_plus) |
3C-assembly_contig_1894: 984457-984517 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUGGCGGGAAUGAGUCUGCUAUUGGCAGUUCCACCUUGCUUGGUAUCUAUCAGAUUCACCUAUGUUGUCUGAGAUGCCAUACAAGGUAAAACUGACAAUGGCUUAACAACCUUCUCAACAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGGCGGGAAUGAGUCU--| G CC CU UA UUCACC
GCUAUUG CAGUU ACCUUG UGGUAUC UCAGA \
CGGUAAC GUCAA UGGAAC ACCGUAG AGUCU U
GACAACUCUUCCAACAAUU^ A AA AU -- GUUGUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Xbo-Novel-2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CCACCUUGCUUGGUAUCUAUCAGA -24
Get sequence
|
|---|
| Star sequence |
Xbo-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- UGAGAUGCCAUACAAGGUAAAA -61
Get sequence
|
|---|
