MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-425

Family name MIR-425 (all species)
Seed AUGACAC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-425  Ami-Mir-425  Bta-Mir-425  Cfa-Mir-425  Cli-Mir-425  Cmi-Mir-425  Cpi-Mir-425  Cpo-Mir-425  Dno-Mir-425  Dre-Mir-425  Ete-Mir-425  Gga-Mir-425  Gja-Mir-425  Gmo-Mir-425  Hsa-Mir-425  Loc-Mir-425  Mal-Mir-425  Mdo-Mir-425  Mml-Mir-425  Mmu-Mir-425  Mun-Mir-425  Oan-Mir-425  Ocu-Mir-425  Pbv-Mir-425  Rno-Mir-425  Sha-Mir-425  Spt-Mir-425  Sto-Mir-425  Tgu-Mir-425  Xla-Mir-425-P1  Xla-Mir-425-P2  Xtr-Mir-425 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 9: 665884-665947 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUCACACCCACACUAGGAGUUUUUUUUUCAAUGACACGUUUUCUCCCGGGUUGCUCAAGGAAAUAAACGCAACCGGGAAUUUCGUGUCAGCCAAGAAUGACUCCCGGAGCGGCAUCACACUGG
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Structure
        10           20        30        40        50        60  
CCUCACACCCACACUAG---|    U     UCAA       UUUUC      G   CUCAAGG 
                    GAGUU UUUUU    UGACACG     UCCCGG UUG       A
                    CUCAG AAGAA    ACUGUGC     AGGGCC AAC       A
GGUCACACUACGGCGAGGCC^    U     CCG-       UUUA-      -   GCAAAUA 
  120       110       100         90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-425_5p
mirBase accessionNone
Sequence 
0- AAUGACACGUUUUCUCCCGGGUUG -24
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Star sequence

Tni-Mir-425_3p*
mirBase accessionNone
Sequence 
42- ACCGGGAAUUUCGUGUCAGCCA -64
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