| MirGeneDB ID | Tni-Mir-26-P4 |
|---|---|
| Family name | MIR-26 (all species) |
| Seed | UCAAGUA |
| Species | Pufferfish (Tetraodon nigroviridis) |
| MiRBase ID | tni-mir-26 |
| Paralogues | Tni-Mir-26-P1a Tni-Mir-26-P1b Tni-Mir-26-P2b |
| Orthologues | Aca-Mir-26-P4 Ami-Mir-26-P4 Bta-Mir-26-P4 Cfa-Mir-26-P4 Cpi-Mir-26-P4 Cpo-Mir-26-P4 Dno-Mir-26-P4 Dre-Mir-26-P4 Ete-Mir-26-P4 Gga-Mir-26-P4 Gja-Mir-26-P4 Gmo-Mir-26-P4 Hsa-Mir-26-P4 Lch-Mir-26-P4 Loc-Mir-26-P4 Mal-Mir-26-P4 Mdo-Mir-26-P4 Mml-Mir-26-P4 Mmu-Mir-26-P4 Mun-Mir-26-P4 Oan-Mir-26-P4 Ocu-Mir-26-P4 Pbv-Mir-26-P4 Pma-Mir-26-o4 Rno-Mir-26-P4 Sha-Mir-26-P4 Spt-Mir-26-P4 Sto-Mir-26-P4 Tgu-Mir-26-P4 Xla-Mir-26-P4a Xla-Mir-26-P4b Xtr-Mir-26-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
|
| Precursor (pre-Mir +30nt flank) | UUCAAGUAAUCCAGGAUAGGCUGGUUAACCCUGCACGGCCUAUUCUUGAUUACUUGUGUCGet precursor sequence |
| Structure | 10 20 UU-- C -| UAA CAAGUAAUC AGGAUAGGCUG GU \ GUUCAUUAG UCUUAUCCGGC CG C CUGU U A^ UCC . 50 40 30 |
| Deep sequencing | |
| Comment | These are likely P2s - see if I can figure out what is going on with other fish. |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Tni-Mir-26-P4_5p |
| mirBase accession | MIMAT0003038 |
| Sequence |
0- UUCAAGUAAUCCAGGAUAGGCU -22
Get sequence
|
| Star sequence | Tni-Mir-26-P4_3p* |
| mirBase accession | None |
| Sequence |
38- CCUAUUCUUGAUUACUUGUGUC -60
Get sequence
|
